Publications

2021

Matson, KJE; Russ, ED; Hua, I; Kathe, C; Maric, D; Squair, J; Courtine, G; Levine, AJ. (2021) Profiling cell type specific responses after spinal cord injury reveals molecular signatures of microglial tissue remodeling. BioRxiv doi: https://doi.org/10.1101/2021.04.28.441862

Do Couto Nicola, F; Hua, I; Levine, AJ. (2021) Intersectional Genetic Tools to Study Skilled Reaching in Mice. In press, Experimental Neurologydoi: 10.1016/j.expneurol.2021.11387

Squair, JW; Gautier, M; Kathe, C; Anderson, MA; James, ND; Hutson, T; Hudelle, R; Qaiser, T; Matson, KJE; Barraud, Q; Levine, AJ; La Manno, G; Skinnider, MA; Courtine, G. (2021) Confronting false discoveries in single-cell differential expression. Nature Communications, 12:5692. doi: 10.1038/s41467-021-25960-2

Russ, ED*; Patterson-Cross, RB*; Li, L; Koch, SC; Matson, KJE; Levine, AJ. (2021) A Harmonized Atlas of Spinal Cord Cell Types and Their Spatial Organization. Nature Communications, 12:5722doi: 10.1038/s41467-021-25125-1

Barik, A; Sathyamurthy, A; Thompson, JH; Seltzer, M; Levine, AJ; Chesler AT. (2021) A spinoparabrachial circuit defined by Tacr1 expression drives pain. eLife 10:e61135. doi: 10.1038/s41467-021-25960-

Patterson-Cross, RB; Levine, AJ*; Menon, V*. (2021) Selecting single cell clustering parameter values using subsampling-based robustness metrics. In press BMC Bioinformatics*co-corresponding. doi: 10.1186/s12859-021-03957-4

Koch, SC; Levine, AJ. (2021) The Neuronal Cell Types of the Spinal Cord. Spinal Interneurons, Elsevier, in press.

 

2020

Skinnider, MA; Squair, JW; Kathe, C; Anderson, MA; Gautier, M; Matson, KJE; Milano, M; Hutson, TH; Barraud, Q; Phillips, AA; Foster, LJ; La Manno, G; Levine, AJ; Courtine, G. (2020) Cell Type Prioritization in Single-Cell Data, Nature Biotechnologydoi: 10.1038/s41587-020-0605-1

Sathyamurthy, A; Barik, A; Dobrott, CI; Chesler, AT; Levine, AJ. (2020) Cerebellospinal neurons regulate motor performance and motor learning Cell Reports, 31: 107595. doi: 10.1016/j.celrep.2020.107595

 

2019

Dobrott, CI; Sathyamurthy, A; Levine, AJ. (2019) Decoding Cell Type Diversity Within the Spinal Cord. Current Opinion in Physiology, 8:1-6. doi: 10.1016/j.cophys.2018.11.006

 

2018

Matson, KJE; Sathyamurthy, A; Johnson, KR; Kelly, MC; Kelley, MW; Levine, AJ. (2018) Isolation of Adult Spinal Cord Nuclei for Massively Parallel Single-Nucleus RNA Sequencing. Journal of Visualized Experiments, 140:e58413. doi: 10.3791/58413

Sathyamurthy, A*; Johnson, KR*; Matson, KEJ; Li, Li; Ryba, AR; Bergman, TB; Dobrott, CI; Kelly, MC; Kelley, MW; Levine, AJ. (2018) Massively Parallel Single Nucleus Transcriptional Profiling Defines Spinal Cord Neurons and Their Activity During Behavior. Cell Reports, 22: 2216-2225. *equal contribution. doi: 10.1016/j.celrep.2018.02.003

Hayashi, M; Hinckley, CA; Driscoll, SP; Moore, NJ; Levine, AJ; Hilde, KL; Sharma, K; Pfaff, SL. (2018) Graded arrays of spinal and supraspinal V2a interneuron subtypes underlie forelimb and hindlimb motor control. Neuron, 97:869-884. doi: 10.1016/j.neuron.2018.01.023

 

2012-2016

Hilde, KL; Levine, AJ; Hinckley, CA; Hayashi, M; Montgomery, JM; Gullo, M; Driscoll, SP; Grosschedl, R; Kohwi, Y; Kohwi-Shigematsu, T; Pfaff, SL. (2016) Satb2 is required for the development of a spinal exteroceptive microcircuit that modulates limb position. Neuron, 91:763-776.

Pawar, K; Cummings, B; Thomas, A; Shea, L; Levine, A; Pfaff, S; Anderson, A (2015) Biomaterial bridges enable regeneration and re-entry of corticospinal tract axons into the caudal spinal cord after SCI: association with recovery of forelimb function. Biomaterials, 65:1-12.

Levine, AJ*, Hinckley, CA*, Hilde, KL, Driscoll, SP, Poon, TH, Montgomery, JM, Pfaff, SL (2014) Identification of a cellular node for motor control pathways. Nature Neuroscience, 17:586:593. *equal contribution

Levine, AJ; Lewallen, KA; Pfaff, SL. (2012) Spatial organization of cortical and spinal neurons controlling motor behavior. Current Opinions in Neurobiology, 22:812-21.